Index

A

add_2d_axes_labels() (in module polyadcirc.pyADCIRC.plotADCIRC) add_dict() (in module polyadcirc.pyGriddata.table_to_mesh_map) add_dict_pair() (in module polyadcirc.pyGriddata.table_to_mesh_map) add_subdomain() (polyadcirc.run_framework.fulldomain.fulldomain method) add_subdomains() (polyadcirc.run_framework.fulldomain.fulldomain method) add_wall() (polyadcirc.run_framework.domain.domain method) adjust() (polyadcirc.run_framework.domain.domain method) adjust_factor() (in module polyadcirc.run_framework.domain)

allgather() (polyadcirc.pyADCIRC.basic.comm_for_no_mpi4py method) allreduce() (polyadcirc.pyADCIRC.basic.comm_for_no_mpi4py method) array_bathymetry() (polyadcirc.run_framework.domain.domain method) array_manningsn() (polyadcirc.run_framework.domain.domain method) array_to_loc_list() (in module polyadcirc.pyADCIRC.fort15_management) array_x() (polyadcirc.run_framework.domain.domain method) array_y() (polyadcirc.run_framework.domain.domain method)

B

basis_functions() (in module polyadcirc.pyADCIRC.plotADCIRC) bathymetry() (in module polyadcirc.pyADCIRC.plotADCIRC)

bcast() (polyadcirc.pyADCIRC.basic.comm_for_no_mpi4py method)

C

check() (polyadcirc.run_framework.subdomain.subdomain method) check_fulldomain() (polyadcirc.run_framework.fulldomain.fulldomain method) (polyadcirc.run_framework.subdomain.subdomain method) check_subdomains() (polyadcirc.run_framework.fulldomain.fulldomain method) circle() (polyadcirc.run_framework.subdomain.subdomain method) clean() (in module polyadcirc.pyADCIRC.fort14_management) cleanup_landuse_folder() (polyadcirc.pyGriddata.grid_management.gridInfo method) cleanup_landuse_folders() (polyadcirc.pyGriddata.grid_management.gridInfo method) colorbar() (in module polyadcirc.pyADCIRC.plotADCIRC) combine_basis_vectors() (in module polyadcirc.pyGriddata.table_to_mesh_map) combine_bv_array() (in module polyadcirc.pyGriddata.table_to_mesh_map) comm_for_no_mpi4py (class in polyadcirc.pyADCIRC.basic) compare() (in module polyadcirc.pyGriddata.grid_management) compare_runSet() (polyadcirc.run_framework.subdomain.subdomain method) compare_to_fulldomain() (polyadcirc.run_framework.subdomain.subdomain method) concatenate() (in module polyadcirc.run_framework.random_manningsn) (polyadcirc.run_framework.random_manningsn.runSet method) condense_bv_dict() (in module polyadcirc.pyGriddata.table_to_mesh_map)

condense_lcm_folder() (in module polyadcirc.pyGriddata.table_to_mesh_map) convert() (in module polyadcirc.pyADCIRC.convert_fort14_to_fort13) (polyadcirc.pyGriddata.grid_management.gridInfo method) convert_go() (in module polyadcirc.pyADCIRC.convert_fort14_to_fort13) convert_to_days() (in module polyadcirc.run_framework.random_manningsn) (polyadcirc.run_framework.random_manningsn.runSet method) convert_to_hours() (in module polyadcirc.run_framework.random_manningsn) (polyadcirc.run_framework.random_manningsn.runSet method) convert_to_percent() (in module polyadcirc.run_framework.random_manningsn) (polyadcirc.run_framework.random_manningsn.runSet method) copy() (in module polyadcirc.pyGriddata.file_management) create_bash_script() (polyadcirc.pyGriddata.grid_management.gridInfo method) create_fort15() (polyadcirc.run_framework.subdomain.subdomain method) create_from_fort13() (in module polyadcirc.pyGriddata.table_to_mesh_map) create_gap_list() (in module polyadcirc.pyGriddata.table_management) create_gap_list_from_folder() (in module polyadcirc.pyGriddata.table_management) create_griddata_input_files() (polyadcirc.pyGriddata.grid_management.gridInfo method) create_shelf() (in module polyadcirc.pyGriddata.table_to_mesh_map) create_table() (in module polyadcirc.pyGriddata.table_management) (polyadcirc.pyGriddata.table_management.gapInfo method) (polyadcirc.pyGriddata.table_management.tableInfo method) create_table_single_value() (in module polyadcirc.pyGriddata.table_management) (polyadcirc.pyGriddata.table_management.gapInfo method) (polyadcirc.pyGriddata.table_management.tableInfo method)

D

determine_types() (in module polyadcirc.pyGriddata.table_to_mesh_map) dict_bathymetry() (polyadcirc.run_framework.domain.domain method) dict_manningsn() (polyadcirc.run_framework.domain.domain method)

dict_to_array() (in module polyadcirc.pyGriddata.table_to_mesh_map) domain (class in polyadcirc.run_framework.domain)

E

element_volume() (in module polyadcirc.pyADCIRC.volume) ellipse() (polyadcirc.run_framework.subdomain.subdomain method)

ellipse_properties() (in module polyadcirc.run_framework.subdomain) (polyadcirc.run_framework.subdomain.subdomain method) Error, [1]

F

fake_stations() (in module polyadcirc.pyADCIRC.fort15_management) field() (in module polyadcirc.pyADCIRC.plotADCIRC) find_neighbors() (polyadcirc.run_framework.domain.domain method) fix_dry_data() (in module polyadcirc.run_framework.random_manningsn) (polyadcirc.run_framework.random_manningsn.runSet method) fix_dry_nodes() (in module polyadcirc.run_framework.random_manningsn) (polyadcirc.run_framework.random_manningsn.runSet method) fix_dry_nodes_nts() (in module polyadcirc.run_framework.random_manningsn) (polyadcirc.run_framework.random_manningsn.runSet method)

flag() (in module polyadcirc.pyADCIRC.fort14_management) flag_fort14() (in module polyadcirc.pyADCIRC.flag_fort14) flag_fort14_go() (in module polyadcirc.pyADCIRC.flag_fort14) flag_go() (in module polyadcirc.pyADCIRC.fort14_management) fulldomain (class in polyadcirc.run_framework.fulldomain)

G

gapInfo (class in polyadcirc.pyGriddata.table_management) genbcs() (polyadcirc.run_framework.subdomain.subdomain method) genbcss() (polyadcirc.run_framework.fulldomain.fulldomain method) genfull() (polyadcirc.run_framework.fulldomain.fulldomain method) (polyadcirc.run_framework.subdomain.subdomain method) gensub() (polyadcirc.run_framework.subdomain.subdomain method) get_basis_vec_array() (in module polyadcirc.pyGriddata.table_to_mesh_map) get_basis_vectors() (in module polyadcirc.pyGriddata.table_to_mesh_map) get_data_nts() (in module polyadcirc.pyADCIRC.output) get_data_ts() (in module polyadcirc.pyADCIRC.output) get_default_nodes() (in module polyadcirc.pyGriddata.table_to_mesh_map)

get_dict_of_unique_tables() (polyadcirc.pyGriddata.grid_management.gridInfo method) get_landclasses() (polyadcirc.pyGriddata.grid_management.gridInfo method) (polyadcirc.pyGriddata.table_management.tableInfo method) get_nts_sr() (in module polyadcirc.pyADCIRC.output) get_num_landclasses() (polyadcirc.pyGriddata.table_management.tableInfo method) Get_rank() (polyadcirc.pyADCIRC.basic.comm_for_no_mpi4py method) Get_size() (polyadcirc.pyADCIRC.basic.comm_for_no_mpi4py method) get_Triangulation() (in module polyadcirc.pyADCIRC.plotADCIRC) (polyadcirc.run_framework.domain.domain method) get_ts_sr() (in module polyadcirc.pyADCIRC.output) gridInfo (class in polyadcirc.pyGriddata.grid_management)

I

initialize_random_field_directories() (polyadcirc.run_framework.random_manningsn.runSet method) InputError

is_flagged() (in module polyadcirc.pyADCIRC.fort14_management)

L

LenError link_fort22() (polyadcirc.run_framework.subdomain.subdomain method) link_random_field_directories() (polyadcirc.run_framework.random_manningsn.runSet method) load_fig_gen_cmap() (in module polyadcirc.pyADCIRC.plotADCIRC)

loadmat() (in module polyadcirc.run_framework.random_manningsn) (in module polyadcirc.run_framework.random_manningsn_Q) (in module polyadcirc.run_framework.random_wall) (in module polyadcirc.run_framework.random_wall_Q) (in module polyadcirc.run_framework.subdomain) loc_list_to_array() (in module polyadcirc.pyADCIRC.fort15_management) local_str() (polyadcirc.pyGriddata.table_management.gapInfo method) location (class in polyadcirc.pyADCIRC.basic)

M

make_node_to_element_map() (polyadcirc.run_framework.domain.domain method) make_plots() (polyadcirc.run_framework.random_manningsn.runSet method) (polyadcirc.run_framework.random_wall.runSet method) mean_field() (in module polyadcirc.pyADCIRC.plotADCIRC) merge_with_fort13() (in module polyadcirc.pyGriddata.table_to_mesh_map)

meshgrid_ndim() (in module polyadcirc.util) mkdir() (in module polyadcirc.pyGriddata.file_management) MPI_for_no_mpi4py (class in polyadcirc.pyADCIRC.basic)

N

node (class in polyadcirc.pyADCIRC.basic) nts_contour() (in module polyadcirc.pyADCIRC.plotADCIRC)

nts_line_data() (in module polyadcirc.pyADCIRC.plotADCIRC) nts_pcolor() (in module polyadcirc.pyADCIRC.plotADCIRC)

P

pickleable (class in polyadcirc.pyADCIRC.basic) plot_basis_functions() (polyadcirc.run_framework.random_manningsn.runSet method) plot_bathymetry() (polyadcirc.run_framework.domain.domain method) plot_mean_field() (polyadcirc.run_framework.random_manningsn.runSet method) plot_random_fields() (polyadcirc.run_framework.random_manningsn.runSet method) plot_station_data() (polyadcirc.run_framework.random_manningsn.runSet method) plot_station_locations() (polyadcirc.run_framework.domain.domain method) plot_walls() (in module polyadcirc.run_framework.random_wall) (polyadcirc.run_framework.random_wall.runSet method) polyadcirc (module) polyadcirc.pyADCIRC (module), [1] polyadcirc.pyADCIRC.basic (module) polyadcirc.pyADCIRC.convert_fort14_to_fort13 (module) polyadcirc.pyADCIRC.flag_fort14 (module) polyadcirc.pyADCIRC.fort13_management (module) polyadcirc.pyADCIRC.fort14_management (module) polyadcirc.pyADCIRC.fort15_management (module) polyadcirc.pyADCIRC.fort1920_management (module) polyadcirc.pyADCIRC.output (module) polyadcirc.pyADCIRC.plotADCIRC (module) polyadcirc.pyADCIRC.post_management (module) polyadcirc.pyADCIRC.prep_management (module) polyadcirc.pyADCIRC.volume (module) polyadcirc.pyGriddata (module), [1]

polyadcirc.pyGriddata.file_management (module) polyadcirc.pyGriddata.grid_management (module) polyadcirc.pyGriddata.manufacture_gap (module) polyadcirc.pyGriddata.table_management (module) polyadcirc.pyGriddata.table_to_mesh_map (module) polyadcirc.run_framework (module), [1] polyadcirc.run_framework.domain (module) polyadcirc.run_framework.fulldomain (module) polyadcirc.run_framework.no_ibrun (module) polyadcirc.run_framework.random_manningsn (module) polyadcirc.run_framework.random_manningsn_Q (module) polyadcirc.run_framework.random_wall (module) polyadcirc.run_framework.random_wall_Q (module) polyadcirc.run_framework.subdomain (module) polyadcirc.util (module) post_script_ALL() (in module polyadcirc.pyADCIRC.post_management) post_script_n() (in module polyadcirc.pyADCIRC.post_management) post_script_sub() (in module polyadcirc.pyADCIRC.post_management) prep_all() (polyadcirc.pyGriddata.grid_management.gridInfo method) prep_script_12() (in module polyadcirc.pyADCIRC.prep_management) prep_script_n() (in module polyadcirc.pyADCIRC.prep_management) prep_test() (polyadcirc.pyGriddata.grid_management.gridInfo method)

R

random() (in module polyadcirc.pyGriddata.manufacture_gap) random_fields() (in module polyadcirc.pyADCIRC.plotADCIRC) random_horizontal() (in module polyadcirc.pyGriddata.manufacture_gap) random_manningsn (class in polyadcirc.run_framework.no_ibrun) random_patches() (in module polyadcirc.pyGriddata.manufacture_gap) random_vertical() (in module polyadcirc.pyGriddata.manufacture_gap) read_and_save_output() (polyadcirc.run_framework.fulldomain.fulldomain method) read_bv_fort13() (polyadcirc.run_framework.subdomain.subdomain method) read_bv_nodes() (polyadcirc.run_framework.subdomain.subdomain method) read_circle() (polyadcirc.run_framework.subdomain.subdomain method) read_default() (in module polyadcirc.pyADCIRC.fort13_management) (polyadcirc.run_framework.domain.domain method) read_ellipse() (polyadcirc.run_framework.subdomain.subdomain method) read_manningsn() (in module polyadcirc.pyADCIRC.fort13_management) read_nodal_attr() (in module polyadcirc.pyADCIRC.fort13_management) (polyadcirc.run_framework.domain.domain method) read_nodal_attr_dict() (in module polyadcirc.pyADCIRC.fort13_management) read_node_num() (in module polyadcirc.pyADCIRC.fort13_management)

read_py_ele() (polyadcirc.run_framework.subdomain.subdomain method) read_py_node() (polyadcirc.run_framework.subdomain.subdomain method) read_recording_data() (in module polyadcirc.pyADCIRC.fort15_management) (polyadcirc.run_framework.domain.domain method) read_spatial_grid() (in module polyadcirc.pyADCIRC.fort14_management) (polyadcirc.run_framework.domain.domain method) read_spatial_grid_header() (in module polyadcirc.pyADCIRC.fort14_management) (polyadcirc.run_framework.domain.domain method) read_table() (in module polyadcirc.pyGriddata.table_management) (polyadcirc.pyGriddata.table_management.gapInfo method) (polyadcirc.pyGriddata.table_management.tableInfo method) read_tables() (in module polyadcirc.pyGriddata.table_management) remove() (in module polyadcirc.pyGriddata.file_management) remove_random_field_directories() (polyadcirc.run_framework.random_manningsn.runSet method) rename13() (in module polyadcirc.pyGriddata.file_management) run() (polyadcirc.run_framework.domain.domain method) run_nobatch() (polyadcirc.run_framework.random_wall.runSet method) run_nobatch_q() (polyadcirc.run_framework.random_manningsn_Q.runSet method) (polyadcirc.run_framework.random_wall_Q.runSet method) run_points() (polyadcirc.run_framework.random_manningsn.runSet method) (polyadcirc.run_framework.random_wall.runSet method) runSet (class in polyadcirc.run_framework.random_manningsn) (class in polyadcirc.run_framework.random_manningsn_Q) (class in polyadcirc.run_framework.random_wall) (class in polyadcirc.run_framework.random_wall_Q)

S

save() (polyadcirc.run_framework.random_manningsn.runSet method) save_show() (in module polyadcirc.pyADCIRC.plotADCIRC) set_bv_fort13() (polyadcirc.run_framework.subdomain.subdomain method) set_fulldomain() (polyadcirc.run_framework.subdomain.subdomain method) set_ihot() (in module polyadcirc.pyADCIRC.fort15_management) set_station_bathymetry() (polyadcirc.run_framework.domain.domain method) set_write_hot() (in module polyadcirc.pyADCIRC.fort15_management) setup() (polyadcirc.run_framework.subdomain.subdomain method) setup_all() (polyadcirc.run_framework.fulldomain.fulldomain method) setup_folder() (polyadcirc.pyGriddata.grid_management.gridInfo method) setup_landuse_folder() (polyadcirc.pyGriddata.grid_management.gridInfo method) setup_landuse_folders() (polyadcirc.pyGriddata.grid_management.gridInfo method) setup_rfdir() (polyadcirc.run_framework.random_manningsn.runSet method)

setup_tables() (polyadcirc.pyGriddata.grid_management.gridInfo method) setup_tables_single_value() (polyadcirc.pyGriddata.grid_management.gridInfo method) side() (in module polyadcirc.pyADCIRC.volume) sin_wave() (in module polyadcirc.pyADCIRC.fort1920_management) split_bv_nodes() (in module polyadcirc.pyGriddata.table_to_mesh_map) station_data() (in module polyadcirc.pyADCIRC.plotADCIRC) station_locations() (in module polyadcirc.pyADCIRC.plotADCIRC) step_wave() (in module polyadcirc.pyADCIRC.fort1920_management) sub_volume() (in module polyadcirc.pyADCIRC.volume) subdomain (class in polyadcirc.run_framework.subdomain) subdomain() (in module polyadcirc.pyADCIRC.fort15_management) symlink() (in module polyadcirc.pyGriddata.file_management)

T

tableInfo (class in polyadcirc.pyGriddata.table_management) time (class in polyadcirc.pyADCIRC.basic) total_volume() (in module polyadcirc.pyADCIRC.volume) triangle() (in module polyadcirc.pyADCIRC.volume) trim_fort13() (in module polyadcirc.run_framework.subdomain) (polyadcirc.run_framework.subdomain.subdomain method) trim_locations() (in module polyadcirc.pyADCIRC.fort15_management)

trim_locations_circle() (in module polyadcirc.pyADCIRC.fort15_management) trim_locations_ellipse() (in module polyadcirc.pyADCIRC.fort15_management) trim_multiple_fort13() (in module polyadcirc.run_framework.subdomain) (polyadcirc.run_framework.subdomain.subdomain method) ts_pcolor() (in module polyadcirc.pyADCIRC.plotADCIRC) ts_quiver() (in module polyadcirc.pyADCIRC.plotADCIRC)

U

update() (in module polyadcirc.pyADCIRC.fort14_management) (polyadcirc.run_framework.domain.domain method) update_dir_file() (polyadcirc.run_framework.random_manningsn.runSet method) update_mann() (in module polyadcirc.pyADCIRC.fort13_management) (polyadcirc.run_framework.domain.domain method) (polyadcirc.run_framework.subdomain.subdomain method)

update_mdict() (polyadcirc.run_framework.random_manningsn.runSet method) (polyadcirc.run_framework.random_manningsn_Q.runSet method) (polyadcirc.run_framework.random_wall_Q.runSet method) update_sub2full_map() (polyadcirc.run_framework.subdomain.subdomain method) update_subdomains() (polyadcirc.run_framework.fulldomain.fulldomain method)

W

write_1() (in module polyadcirc.pyADCIRC.prep_management) write_2() (in module polyadcirc.pyADCIRC.prep_management) write_5() (in module polyadcirc.pyADCIRC.prep_management) write_ALL() (in module polyadcirc.pyADCIRC.post_management) write_fort19() (in module polyadcirc.pyADCIRC.fort1920_management) write_fort20() (in module polyadcirc.pyADCIRC.fort1920_management) write_gapfile() (in module polyadcirc.pyGriddata.manufacture_gap) write_manningsn() (in module polyadcirc.pyADCIRC.fort13_management) write_multi() (in module polyadcirc.pyADCIRC.post_management)

write_n() (in module polyadcirc.pyADCIRC.post_management) (in module polyadcirc.pyADCIRC.prep_management) write_prep_script() (polyadcirc.run_framework.random_manningsn.runSet method) write_run_script() (polyadcirc.run_framework.random_manningsn.runSet method) write_run_script_ibrun() (polyadcirc.run_framework.random_manningsn.runSet method) write_run_script_no_ibrun() (polyadcirc.run_framework.no_ibrun.random_manningsn method) write_run_script_noibrun() (polyadcirc.run_framework.random_manningsn.runSet method) write_run_script_noibrun_MPI19() (polyadcirc.run_framework.random_manningsn.runSet method) write_sub() (in module polyadcirc.pyADCIRC.post_management)